Development of Microsatellite Markers and Analysis of Genetic Diversity and Population Structure of Colletotrichum gloeosporioides from Ethiopia
Identifieur interne : 000255 ( Main/Exploration ); précédent : 000254; suivant : 000256Development of Microsatellite Markers and Analysis of Genetic Diversity and Population Structure of Colletotrichum gloeosporioides from Ethiopia
Auteurs : Asmare D. Moges [Éthiopie, Kenya] ; Belayneh Admassu [Éthiopie] ; Derbew Belew [Éthiopie] ; Mohammed Yesuf [Éthiopie] ; Joyce Njuguna [Kenya] ; Martina Kyalo [Kenya] ; Sita R. Ghimire [Kenya]Source :
- PLoS ONE [ 1932-6203 ] ; 2016.
Abstract
Twenty three polymorphic microsatellite markers were developed for citrus plant pathogenic fungus,
Url:
DOI: 10.1371/journal.pone.0151257
PubMed: 26978654
PubMed Central: 4792483
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Development of Microsatellite Markers and Analysis of Genetic Diversity and Population Structure of <italic>Colletotrichum gloeosporioides</italic> from Ethiopia</title><author><name sortKey="Moges, Asmare D" sort="Moges, Asmare D" uniqKey="Moges A" first="Asmare D." last="Moges">Asmare D. Moges</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama</wicri:regionArea><wicri:noRegion>Adama</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma</wicri:regionArea><wicri:noRegion>Jimma</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author><author><name sortKey="Admassu, Belayneh" sort="Admassu, Belayneh" uniqKey="Admassu B" first="Belayneh" last="Admassu">Belayneh Admassu</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Agricultural Biotechnology, Ethiopian Institute of Agricultural Research, Holetta, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Agricultural Biotechnology, Ethiopian Institute of Agricultural Research, Holetta</wicri:regionArea><wicri:noRegion>Holetta</wicri:noRegion></affiliation></author><author><name sortKey="Belew, Derbew" sort="Belew, Derbew" uniqKey="Belew D" first="Derbew" last="Belew">Derbew Belew</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma</wicri:regionArea><wicri:noRegion>Jimma</wicri:noRegion></affiliation></author><author><name sortKey="Yesuf, Mohammed" sort="Yesuf, Mohammed" uniqKey="Yesuf M" first="Mohammed" last="Yesuf">Mohammed Yesuf</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama</wicri:regionArea><wicri:noRegion>Adama</wicri:noRegion></affiliation></author><author><name sortKey="Njuguna, Joyce" sort="Njuguna, Joyce" uniqKey="Njuguna J" first="Joyce" last="Njuguna">Joyce Njuguna</name><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author><author><name sortKey="Kyalo, Martina" sort="Kyalo, Martina" uniqKey="Kyalo M" first="Martina" last="Kyalo">Martina Kyalo</name><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author><author><name sortKey="Ghimire, Sita R" sort="Ghimire, Sita R" uniqKey="Ghimire S" first="Sita R." last="Ghimire">Sita R. Ghimire</name><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">26978654</idno><idno type="pmc">4792483</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4792483</idno><idno type="RBID">PMC:4792483</idno><idno type="doi">10.1371/journal.pone.0151257</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000383</idno><idno type="wicri:Area/Pmc/Curation">000382</idno><idno type="wicri:Area/Pmc/Checkpoint">000210</idno><idno type="wicri:Area/Ncbi/Merge">001F60</idno><idno type="wicri:Area/Ncbi/Curation">001F60</idno><idno type="wicri:Area/Ncbi/Checkpoint">001F60</idno><idno type="wicri:Area/Main/Merge">000255</idno><idno type="wicri:Area/Main/Curation">000255</idno><idno type="wicri:Area/Main/Exploration">000255</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Development of Microsatellite Markers and Analysis of Genetic Diversity and Population Structure of <italic>Colletotrichum gloeosporioides</italic> from Ethiopia</title><author><name sortKey="Moges, Asmare D" sort="Moges, Asmare D" uniqKey="Moges A" first="Asmare D." last="Moges">Asmare D. Moges</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama</wicri:regionArea><wicri:noRegion>Adama</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma</wicri:regionArea><wicri:noRegion>Jimma</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author><author><name sortKey="Admassu, Belayneh" sort="Admassu, Belayneh" uniqKey="Admassu B" first="Belayneh" last="Admassu">Belayneh Admassu</name><affiliation wicri:level="1"><nlm:aff id="aff002"><addr-line>Department of Agricultural Biotechnology, Ethiopian Institute of Agricultural Research, Holetta, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Agricultural Biotechnology, Ethiopian Institute of Agricultural Research, Holetta</wicri:regionArea><wicri:noRegion>Holetta</wicri:noRegion></affiliation></author><author><name sortKey="Belew, Derbew" sort="Belew, Derbew" uniqKey="Belew D" first="Derbew" last="Belew">Derbew Belew</name><affiliation wicri:level="1"><nlm:aff id="aff003"><addr-line>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture and Plant Sciences, College of Agriculture and Veterinary Medicine, Jimma University, Jimma</wicri:regionArea><wicri:noRegion>Jimma</wicri:noRegion></affiliation></author><author><name sortKey="Yesuf, Mohammed" sort="Yesuf, Mohammed" uniqKey="Yesuf M" first="Mohammed" last="Yesuf">Mohammed Yesuf</name><affiliation wicri:level="1"><nlm:aff id="aff001"><addr-line>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama, Ethiopia</addr-line></nlm:aff><country xml:lang="fr">Éthiopie</country><wicri:regionArea>Department of Horticulture, Ethiopian Institute of Agricultural Research, Adama</wicri:regionArea><wicri:noRegion>Adama</wicri:noRegion></affiliation></author><author><name sortKey="Njuguna, Joyce" sort="Njuguna, Joyce" uniqKey="Njuguna J" first="Joyce" last="Njuguna">Joyce Njuguna</name><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author><author><name sortKey="Kyalo, Martina" sort="Kyalo, Martina" uniqKey="Kyalo M" first="Martina" last="Kyalo">Martina Kyalo</name><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author><author><name sortKey="Ghimire, Sita R" sort="Ghimire, Sita R" uniqKey="Ghimire S" first="Sita R." last="Ghimire">Sita R. Ghimire</name><affiliation wicri:level="1"><nlm:aff id="aff004"><addr-line>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi, Kenya</addr-line></nlm:aff><country xml:lang="fr">Kenya</country><wicri:regionArea>Biosciences eastern and central Africa Hub, International Livestock Research Institute, Nairobi</wicri:regionArea><wicri:noRegion>Nairobi</wicri:noRegion></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Twenty three polymorphic microsatellite markers were developed for citrus plant pathogenic fungus, <italic>Colletotrichum gloeosporioides</italic>, and were used to analyze genetic diversity and population structure of 163 isolates from four different geographical regions of Ethiopia. These loci produced a total of 118 alleles with an average of 5.13 alleles per microsatellite marker. The polymorphic information content values ranged from 0.104 to 0.597 with an average of 0.371. The average observed heterozygosity across all loci varied from 0.046 to 0.058. The gene diversity among the loci ranged from 0.106 to 0.664. Unweighted Neighbor-joining and population structure analysis grouped these 163 isolates into three major groups. The clusters were not according to the geographic origin of the isolates. Analysis of molecular variance showed 85% of the total variation within populations and only 5% among populations. There was low genetic differentiation in the total populations (F<sub>ST</sub> = 0.049) as evidenced by high level of gene flow estimate (N<sub>m</sub> = 4.8 per generation) among populations. The results show that Ethiopian <italic>C</italic>. <italic>gloeosporioides</italic> populations are generally characterized by a low level of genetic diversity. The newly developed microsatellite markers were useful in analyzing the genetic diversity and population structure of the <italic>C</italic>. <italic>gloeosporioides</italic> populations. Information obtained from this study could be useful as a base to design strategies for better management of leaf and fruit spot disease of citrus in Ethiopia.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Gebre Mariam, S" uniqKey="Gebre Mariam S">S Gebre-Mariam</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Yesuf, M" uniqKey="Yesuf M">M Yesuf</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Derso, E" uniqKey="Derso E">E Derso</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Abang, Mm" uniqKey="Abang M">MM Abang</name></author><author><name sortKey="Winter, S" uniqKey="Winter S">S Winter</name></author><author><name sortKey="Mignouna, Hd" uniqKey="Mignouna H">HD Mignouna</name></author><author><name sortKey="Green, Kr" uniqKey="Green K">KR Green</name></author><author><name sortKey="Asiedu, R" 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Winter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Urena Padilla, Ar" uniqKey="Urena Padilla A">AR Urena-Padilla</name></author><author><name sortKey="Mackenzie, Sj" uniqKey="Mackenzie S">SJ MacKenzie</name></author><author><name sortKey="Bowen, Bw" uniqKey="Bowen B">BW Bowen</name></author><author><name sortKey="Legard, De" uniqKey="Legard D">DE Legard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kawecki, Tj" uniqKey="Kawecki T">TJ Kawecki</name></author><author><name sortKey="Ebert, D" uniqKey="Ebert D">D Ebert</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mcdermott, Jm" uniqKey="Mcdermott J">JM McDermott</name></author><author><name sortKey="Mcdonald, Ba" uniqKey="Mcdonald B">BA McDonald</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Kenya</li><li>Éthiopie</li></country></list><tree><country name="Éthiopie"><noRegion><name sortKey="Moges, Asmare D" sort="Moges, Asmare D" uniqKey="Moges A" first="Asmare D." last="Moges">Asmare D. Moges</name></noRegion><name sortKey="Admassu, Belayneh" sort="Admassu, Belayneh" uniqKey="Admassu B" first="Belayneh" last="Admassu">Belayneh Admassu</name><name sortKey="Belew, Derbew" sort="Belew, Derbew" uniqKey="Belew D" first="Derbew" last="Belew">Derbew Belew</name><name sortKey="Moges, Asmare D" sort="Moges, Asmare D" uniqKey="Moges A" first="Asmare D." last="Moges">Asmare D. Moges</name><name sortKey="Yesuf, Mohammed" sort="Yesuf, Mohammed" uniqKey="Yesuf M" first="Mohammed" last="Yesuf">Mohammed Yesuf</name></country><country name="Kenya"><noRegion><name sortKey="Moges, Asmare D" sort="Moges, Asmare D" uniqKey="Moges A" first="Asmare D." last="Moges">Asmare D. Moges</name></noRegion><name sortKey="Ghimire, Sita R" sort="Ghimire, Sita R" uniqKey="Ghimire S" first="Sita R." last="Ghimire">Sita R. Ghimire</name><name sortKey="Kyalo, Martina" sort="Kyalo, Martina" uniqKey="Kyalo M" first="Martina" last="Kyalo">Martina Kyalo</name><name sortKey="Njuguna, Joyce" sort="Njuguna, Joyce" uniqKey="Njuguna J" first="Joyce" last="Njuguna">Joyce Njuguna</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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